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Active Learning

Pick the next batch of compounds to make from your measurements, balancing predicted value, uncertainty and diversity

Hardware and price

Price per run

What a typical run reserves from your wallet: the catalog's expected runtime on each piece of hardware × your plan's per-second rate. Larger inputs reserve more, and you're charged only for the seconds the job actually runs.

Active Learning: reservation per run, USD
HardwareTypical runtimeBasicStarterProEnterprise
CPUDefault5 min$0.042$0.024$0.015$0.009

In workflows

Chain it with other steps.

Each input and output has a data kind, so the builder only connects steps that fit.

Inputs

  • Molecules (list) · optionalSMILES
  • Table (list) · optionalCSV, TSV, JSON
  • Table (list) · optionalCSV, TSV, JSON
  • Trained model · optionalOPAQUE

Outputs

  • ArchiveZIP
  • MoleculesSMILES
  • TableCSV

Ready-made workflows that use it

References

The method behind it.

  1. Liva Ralaivola, Sanjay J. Swamidass, Hiroto Saigo et al. (2005). Graph kernels for chemical informatics. Neural Networks. doi:10.1016/j.neunet.2005.07.009 (opens in a new tab)
  2. Donald R. Jones, Matthias Schonlau, William J. Welch (1998). Efficient Global Optimization of Expensive Black-Box Functions. Journal of Global Optimization. doi:10.1023/a:1008306431147 (opens in a new tab)
  3. Niranjan Srinivas, Andreas Krause, Sham M. Kakade et al. (2012). Information-Theoretic Regret Bounds for Gaussian Process Optimization in the Bandit Setting. IEEE Transactions on Information Theory. doi:10.1109/tit.2011.2182033 (opens in a new tab)
  4. David Ginsbourger, Rodolphe Le Riche, Laurent Carraro (2010). Kriging Is Well-Suited to Parallelize Optimization. Computational Intelligence in Expensive Optimization Problems. doi:10.1007/978-3-642-10701-6_6 (opens in a new tab)

Run via API

Submit it from your own code.

Use an API key from your account. The estimate uses your plan's rates; submitting reserves that amount from your wallet.

# Estimate the reservation for your plan (payload fields: see the API reference)
curl -X POST https://api.cognichem.com/api/v1/jobs/estimate \
  -H "X-Api-Key: $COGNICHEM_API_KEY" \
  -H "Content-Type: application/json" \
  -d '{"job_type": "active-learning", "resource": "cpu", "payload": {}}'

# Submit (retrying with the same Idempotency-Key never submits twice)
curl -X POST https://api.cognichem.com/api/v1/jobs/submit \
  -H "X-Api-Key: $COGNICHEM_API_KEY" \
  -H "Idempotency-Key: $(uuidgen)" \
  -H "Content-Type: application/json" \
  -d '{"job_name": "active-learning-1", "job_type": "active-learning", "resource": "cpu", "payload": { ... }}'
Payload fields and examples in the docs

Custom Modeling

  • MPNN Models

    Fast structure-property inference that highlights key molecule substructures

  • QSAR Models

    Compare random forest, LightGBM, Gaussian process and other QSAR models on your data and keep the best

  • Target Rescorer

    Learn a target-specific score from Vina, GNINA, Boltz-2, MM-GBSA and PLIP signals on your measured compounds, and see which signals predict activity

  • Reaction Models

    Predict reaction yield, selectivity and rates from atom-mapped reactions and their conditions

  • Thermo Property Models

    Correct Joback and Hansen estimates with your own measurements and predict solubility and mixture properties

  • Python Script Sandbox

    Short RDKit, pandas, NumPy and SciPy analyses of your results, run in isolation with no network access

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